rs941590
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_001100607.3(SERPINA10):c.137A>T(p.Lys46Met) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant was absent in control chromosomes in GnomAD project. In-silico tool predicts a benign outcome for this variant. 16/21 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another variant affecting the same amino acid position, but resulting in a different missense (i.e. K46R) has been classified as Likely benign.
Frequency
Consequence
NM_001100607.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
SERPINA10 | NM_001100607.3 | c.137A>T | p.Lys46Met | missense_variant | 2/5 | ENST00000261994.9 | |
SERPINA10 | NM_016186.3 | c.137A>T | p.Lys46Met | missense_variant | 2/5 | ||
SERPINA10 | XM_017021353.2 | c.257A>T | p.Lys86Met | missense_variant | 3/6 | ||
SERPINA10 | XM_005267733.6 | c.137A>T | p.Lys46Met | missense_variant | 2/5 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
SERPINA10 | ENST00000261994.9 | c.137A>T | p.Lys46Met | missense_variant | 2/5 | 1 | NM_001100607.3 | A2 | |
SERPINA10 | ENST00000554723.5 | c.257A>T | p.Lys86Met | missense_variant | 2/5 | 1 | P4 | ||
SERPINA10 | ENST00000393096.5 | c.137A>T | p.Lys46Met | missense_variant | 2/5 | 1 | A2 | ||
SERPINA10 | ENST00000554173.1 | c.137A>T | p.Lys46Met | missense_variant | 1/4 | 1 | A2 |
Frequencies
GnomAD3 genomes ? Cov.: 32
GnomAD4 exome Cov.: 69
GnomAD4 genome ? Cov.: 32
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at