7-150470842-A-G
Variant summary
Our verdict is Likely benign. Variant got -2 ACMG points: 2P and 4B. PM2BP4_Strong
The NM_175571.4(GIMAP8):āc.650A>Gā(p.Glu217Gly) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000187 in 1,600,616 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 15/21 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (ā ).
Frequency
Consequence
NM_175571.4 missense
Scores
Clinical Significance
Conservation
Genome browser will be placed here
ACMG classification
Verdict is Likely_benign. Variant got -2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
GIMAP8 | NM_175571.4 | c.650A>G | p.Glu217Gly | missense_variant | 3/5 | ENST00000307271.4 | NP_783161.1 | |
GIMAP8 | XM_005249950.5 | c.650A>G | p.Glu217Gly | missense_variant | 4/6 | XP_005250007.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
GIMAP8 | ENST00000307271.4 | c.650A>G | p.Glu217Gly | missense_variant | 3/5 | 1 | NM_175571.4 | ENSP00000305107.3 |
Frequencies
GnomAD3 genomes AF: 0.0000134 AC: 2AN: 148784Hom.: 0 Cov.: 30
GnomAD3 exomes AF: 0.00000398 AC: 1AN: 251260Hom.: 0 AF XY: 0.00000736 AC XY: 1AN XY: 135810
GnomAD4 exome AF: 6.89e-7 AC: 1AN: 1451832Hom.: 0 Cov.: 29 AF XY: 0.00000138 AC XY: 1AN XY: 722816
GnomAD4 genome AF: 0.0000134 AC: 2AN: 148784Hom.: 0 Cov.: 30 AF XY: 0.00 AC XY: 0AN XY: 72362
ClinVar
Submissions by phenotype
not specified Uncertain:1
Uncertain significance, criteria provided, single submitter | clinical testing | Ambry Genetics | Jul 19, 2022 | The c.650A>G (p.E217G) alteration is located in exon 3 (coding exon 2) of the GIMAP8 gene. This alteration results from a A to G substitution at nucleotide position 650, causing the glutamic acid (E) at amino acid position 217 to be replaced by a glycine (G). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at