NM_005859.5:c.126_146dupCAGTGGCGGCGGCGGCGGCGG
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP6_Moderate
The NM_005859.5(PURA):c.126_146dupCAGTGGCGGCGGCGGCGGCGG(p.Gly49_Ala50insSerGlyGlyGlyGlyGlyGly) variant causes a disruptive inframe insertion change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000201 in 149,126 control chromosomes in the GnomAD database, with no homozygous occurrence. Variant has been reported in ClinVar as Likely benign (★). Synonymous variant affecting the same amino acid position (i.e. G49G) has been classified as Likely benign.
Frequency
Consequence
NM_005859.5 disruptive_inframe_insertion
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
PURA | ENST00000331327.5 | c.126_146dupCAGTGGCGGCGGCGGCGGCGG | p.Gly49_Ala50insSerGlyGlyGlyGlyGlyGly | disruptive_inframe_insertion | Exon 1 of 1 | 6 | NM_005859.5 | ENSP00000332706.3 | ||
PURA | ENST00000651386.1 | c.126_146dupCAGTGGCGGCGGCGGCGGCGG | p.Gly49_Ala50insSerGlyGlyGlyGlyGlyGly | disruptive_inframe_insertion | Exon 2 of 2 | ENSP00000499133.1 | ||||
PURA | ENST00000505703.2 | c.126_146dupCAGTGGCGGCGGCGGCGGCGG | p.Gly49_Ala50insSerGlyGlyGlyGlyGlyGly | disruptive_inframe_insertion | Exon 2 of 2 | 3 | ENSP00000498560.1 | |||
PURA | ENST00000502351.1 | c.*35_*36insGGCGGCGGCGGCAGTGGCGGC | downstream_gene_variant | 2 | ENSP00000498760.1 |
Frequencies
GnomAD3 genomes AF: 0.0000201 AC: 3AN: 149126Hom.: 0 Cov.: 31
GnomAD4 exome Data not reliable, filtered out with message: AS_VQSR AF: 0.0000950 AC: 105AN: 1105424Hom.: 0 Cov.: 31 AF XY: 0.000107 AC XY: 57AN XY: 531428
GnomAD4 genome AF: 0.0000201 AC: 3AN: 149126Hom.: 0 Cov.: 31 AF XY: 0.00 AC XY: 0AN XY: 72718
ClinVar
Submissions by phenotype
PURA-related severe neonatal hypotonia-seizures-encephalopathy syndrome Benign:1
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Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at